| # | Title | Journal | Year | Citations |
|---|
| 1 | Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation | Nature Biotechnology | 2010 | 13,805 |
| 2 | An efficient k-means clustering algorithm: analysis and implementation | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2002 | 4,109 |
| 3 | A fast, lock-free approach for efficient parallel counting of occurrences of k-mers | Bioinformatics | 2011 | 3,146 |
| 4 | Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments | Genome Biology | 2008 | 2,484 |
| 5 | Program Slicing | IEEE Transactions on Software Engineering | 1984 | 2,125 |
| 6 | Modelling disease outbreaks in realistic urban social networks | Nature | 2004 | 1,685 |
| 7 | Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples | PLoS Computational Biology | 2009 | 1,495 |
| 8 | Background and foreground modeling using nonparametric kernel density estimation for visual surveillance | Proceedings of the IEEE | 2002 | 1,238 |
| 9 | ARDB--Antibiotic Resistance Genes Database | Nucleic Acids Research | 2009 | 1,089 |
| 10 | Efficient and effective Querying by Image Content | Journal of Intelligent Information Systems | 1994 | 1,009 |
| 11 | Approximation Algorithms for Connected Dominating Sets | Algorithmica | 1998 | 955 |
| 12 | Shape Classification Using the Inner-Distance | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2007 | 948 |
| 13 | Fast subsequence matching in time-series databases | IEEE Transactions on Pattern Analysis and Machine Intelligence | 1994 | 926 |
| 14 | Nearest neighbor queries | IEEE Transactions on Pattern Analysis and Machine Intelligence | 1995 | 902 |
| 15 | A Methodology for Collecting Valid Software Engineering Data | IEEE Transactions on Software Engineering | 1984 | 725 |
| 16 | Heuristic Algorithms for Scheduling Independent Tasks on Nonidentical Processors | Journal of the ACM | 1977 | 687 |
| 17 | SHOP2: An HTN Planning System | Journal of Artificial Intelligence Research | 0 | 565 |
| 18 | WLAN location determination via clustering and probability distributions | Journal of Artificial Intelligence Research | 0 | 554 |
| 19 | Landmarks in graphs | Discrete Applied Mathematics | 1996 | 551 |
| 20 | Fast subsequence matching in time-series databases | SIGMOD Record | 1994 | 549 |
| 21 | FastMap | SIGMOD Record | 1995 | 531 |
| 22 | Integrating Hi-C links with assembly graphs for chromosome-scale assembly | PLoS Computational Biology | 2019 | 509 |
| 23 | Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma | Nature Medicine | 2018 | 473 |
| 24 | Quake: quality-aware detection and correction of sequencing errors | Genome Biology | 2010 | 470 |
| 25 | Testing Programs with the Aid of a Compiler | IEEE Transactions on Software Engineering | 1977 | 419 |
| 26 | Mobile Data Offloading through Opportunistic Communications and Social Participation | IEEE Transactions on Mobile Computing | 2012 | 417 |
| 27 | What are decision trees? | Nature Biotechnology | 2008 | 409 |
| 28 | Improving data locality with loop transformations | ACM Transactions on Programming Languages and Systems | 1996 | 407 |
| 29 | Localizing Parts of Faces Using a Consensus of Exemplars | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2013 | 406 |
| 30 | Observing Human-Object Interactions: Using Spatial and Functional Compatibility for Recognition | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2009 | 404 |
| 31 | Localizing parts of faces using a consensus of exemplars | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2011 | 401 |
| 32 | Exploit All the Layers: Fast and Accurate CNN Object Detector with Scale Dependent Pooling and Cascaded Rejection Classifiers | IEEE Transactions on Pattern Analysis and Machine Intelligence | 2016 | 401 |
| 33 | Sequence assembly demystified | Nature Reviews Genetics | 2013 | 396 |
| 34 | De novo assembly of the cattle reference genome with single-molecule sequencing | GigaScience | 2020 | 380 |
| 35 | Experimentation in software engineering | IEEE Transactions on Software Engineering | 1986 | 375 |
| 36 | Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality | PLoS Computational Biology | 2008 | 373 |
| 37 | A Forward-Secure Public-Key Encryption Scheme | Lecture Notes in Computer Science | 2003 | 365 |
| 38 | Comparative cellular analysis of motor cortex in human, marmoset and mouse | Nature | 2021 | 361 |
| 39 | Comparing the Effectiveness of Software Testing Strategies | IEEE Transactions on Software Engineering | 1987 | 353 |
| 40 | Human-Centered Artificial Intelligence: Reliable, Safe & Trustworthy | International Journal of Human-Computer Interaction | 2020 | 353 |
| 41 | Main memory database systems: an overview | IEEE Transactions on Knowledge and Data Engineering | 1992 | 350 |
| 42 | Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis | PLoS Biology | 2010 | 348 |
| 43 | A clustering scheme for hierarchical control in multi-hop wireless networks | PLoS Biology | 0 | 337 |
| 44 | Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease | PLoS ONE | 2012 | 329 |
| 45 | Diagnostic expert systems based on a set covering model | International Journal of Man-Machine Studies | 1983 | 325 |
| 46 | Automatic thumbnail cropping and its effectiveness | International Journal of Man-Machine Studies | 2003 | 321 |
| 47 | Models for channels with memory and their applications to error control | Proceedings of the IEEE | 1978 | 319 |
| 48 | Comparing detection methods for software requirements inspections: a replicated experiment | IEEE Transactions on Software Engineering | 1995 | 318 |
| 49 | Photometric Stereo with General, Unknown Lighting | International Journal of Computer Vision | 2007 | 316 |
| 50 | The power of protein interaction networks for associating genes with diseases | Bioinformatics | 2010 | 314 |
