Department of Computer Science

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Top Articles

#	Title	Journal	Year	Citations
1	Comparative Analysis of Proteome and Transcriptome Variation in Mouse	PLoS Genetics	2011	548
2	Electrowetting and electrowetting-on-dielectric for microscale liquid handling	Sensors and Actuators A: Physical	2002	546
3	Chromosome conformation elucidates regulatory relationships in developing human brain	Nature	2016	507
4	Integrating Functional Data to Prioritize Causal Variants in Statistical Fine-Mapping Studies	PLoS Genetics	2014	475
5	BFAST: An Alignment Tool for Large Scale Genome Resequencing	PLoS ONE	2009	444
6	Identifying Causal Variants at Loci with Multiple Signals of Association	Genetics	2014	400
7	FEAST: fast expectation-maximization for microbial source tracking	Nature Methods	2019	275
8	Probabilistic fine-mapping of transcriptome-wide association studies	Nature Genetics	2019	275
9	The Smallest Grammar Problem	IEEE Transactions on Information Theory	2005	266
10	Towards software-defined VANET: Architecture and services		2014	257
11	The semantics of clear, a specification language	Lecture Notes in Computer Science	1980	251
12	VAPR: Void-Aware Pressure Routing for Underwater Sensor Networks	IEEE Transactions on Mobile Computing	2013	237
13	Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies	Nature Methods	2016	205
14	A Compositional and Dynamic Model for Face Aging	IEEE Transactions on Pattern Analysis and Machine Intelligence	2010	190
15	Multifaceted protein–protein interaction prediction based on Siamese residual RCNN	Bioinformatics	2019	181
16	FreeLoc: Calibration-free crowdsourced indoor localization		2013	176
17	Interpreting Meta-Analyses of Genome-Wide Association Studies	PLoS Genetics	2012	171
18	SACNN: Self-Attention Convolutional Neural Network for Low-Dose CT Denoising With Self-Supervised Perceptual Loss Network	IEEE Transactions on Medical Imaging	2020	170
19	Genome-wide association study of Tourette's syndrome	Molecular Psychiatry	2013	161
20	Energy Theft Detection With Energy Privacy Preservation in the Smart Grid	IEEE Internet of Things Journal	2019	131
21	Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline	PLoS ONE	2010	120
22	Genome-wide methylation data mirror ancestry information	Epigenetics and Chromatin	2017	120
23	Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics	Nature Communications	2020	117
24	Systematic benchmarking of omics computational tools	Nature Communications	2019	111
25	Mouse Genome-Wide Association and Systems Genetics Identify Asxl2 As a Regulator of Bone Mineral Density and Osteoclastogenesis	PLoS Genetics	2011	108
26	Optimal algorithms for haplotype assembly from whole-genome sequence data	Bioinformatics	2010	106
27	DIFS: a distributed index for features in sensor networks	Ad Hoc Networks	2003	102
28	Towards Recognition-Based Variational Segmentation Using Shape Priors and Dynamic Labeling	Lecture Notes in Computer Science	2003	94
29	Regional 133Xenon cerebral blood flow and cerebral 99mTc-HMPAO uptake in patients with obsessive-compulsive disorder before and during treatment	Biological Psychiatry	1995	92
30	Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology	Nature Communications	2019	92
31	Toward Communication Strategies for Platooning: Simulative and Experimental Evaluation	IEEE Transactions on Vehicular Technology	2015	89
32	Binary-Partition-Assisted MAC-Layer Broadcast for Emergency Message Dissemination in VANETs	IEEE Transactions on Intelligent Transportation Systems	2011	87
33	DOTS: A Propagation Delay-Aware Opportunistic MAC Protocol for Mobile Underwater Networks	IEEE Transactions on Mobile Computing	2014	87
34	A Comprehensive Map of Genetic Variation in the World’s Largest Ethnic Group—Han Chinese	Molecular Biology and Evolution	2018	86
35	MetaPheno: A critical evaluation of deep learning and machine learning in metagenome-based disease prediction	Methods	2019	86
36	Identification and Functional Validation of the Novel Antimalarial Resistance Locus PF10_0355 in Plasmodium falciparum	PLoS Genetics	2011	85
37	Linear Models: A Useful “Microscope” for Causal Analysis	Journal of Causal Inference	2013	85
38	FleaNet: A Virtual Market Place on Vehicular Networks	IEEE Transactions on Vehicular Technology	2010	83
39	BAHG: Back-Bone-Assisted Hop Greedy Routing for VANET's City Environments	IEEE Transactions on Intelligent Transportation Systems	2013	82
40	Recognition of Nutrition Intake Using Time-Frequency Decomposition in a Wearable Necklace Using a Piezoelectric Sensor	IEEE Sensors Journal	2015	81
41	FPGA Design Automation: A Survey	Foundations and Trends in Electronic Design Automation	2006	80
42	Transportability of Causal and Statistical Relations: A Formal Approach		2011	79
43	Accelerating read mapping with FastHASH	BMC Genomics	2013	79
44	Multi-Institutional Validation of a Mammography-Based Breast Cancer Risk Model	Journal of Clinical Oncology	2022	71
45	Divergent transcriptional regulation of astrocyte reactivity across disorders	Nature	2022	69
46	A dense pressure sensitive bedsheet design for unobtrusive sleep posture monitoring		2013	66
47	Old Bachelor Acceptance: A New Class of Non-Monotone Threshold Accepting Methods	ORSA Journal on Computing	1995	65
48	Efficient Multiple-Trait Association and Estimation of Genetic Correlation Using the Matrix-Variate Linear Mixed Model	Genetics	2015	64
49	Improving the usability and archival stability of bioinformatics software	Genome Biology	2019	62
50	Phero-trail: a bio-inspired location service for mobile underwater sensor networks	IEEE Journal on Selected Areas in Communications	2010	61

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