Cell Reports Methods

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Top Articles

#	Title	Journal	Year	Citations
1	Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations	Cell Reports Methods	2021	272
2	Deep learning neural network tools for proteomics	Cell Reports Methods	2021	48
3	A mixture-of-experts deep generative model for integrated analysis of single-cell multiomics data	Cell Reports Methods	2021	47
4	hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data	Cell Reports Methods	2023	43
5	Super-resolved live-cell imaging using random illumination microscopy	Cell Reports Methods	2021	36
6	PeakVI: A deep generative model for single-cell chromatin accessibility analysis	Cell Reports Methods	2022	34
7	DIPA-CRISPR is a simple and accessible method for insect gene editing	Cell Reports Methods	2022	34
8	A method for characterizing daily physiology from widely used wearables	Cell Reports Methods	2021	30
9	Global analysis of protein arginine methylation	Cell Reports Methods	2021	27
10	Four-color single-molecule imaging with engineered tags resolves the molecular architecture of signaling complexes in the plasma membrane	Cell Reports Methods	2022	27
11	Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells	Cell Reports Methods	2021	26
12	A size-exclusion-based approach for purifying extracellular vesicles from human plasma	Cell Reports Methods	2021	25
13	Development of a pan-neuronal genetic driver in Aedes aegypti mosquitoes	Cell Reports Methods	2021	25
14	Model-based assessment of mammalian cell metabolic functionalities using omics data	Cell Reports Methods	2021	25
15	A molecular toolbox for ADP-ribosyl binding proteins	Cell Reports Methods	2021	25
16	Systematic discovery and validation of T cell targets directed against oncogenic KRAS mutations	Cell Reports Methods	2021	24
17	Inference of high-resolution trajectories in single-cell RNA-seq data by using RNA velocity	Cell Reports Methods	2021	24
18	Spectral fiber photometry derives hemoglobin concentration changes for accurate measurement of fluorescent sensor activity	Cell Reports Methods	2022	23
19	Toward reproducible, scalable, and robust data analysis across multiplex tissue imaging platforms	Cell Reports Methods	2021	22
20	Discovery and validation of human genomic safe harbor sites for gene and cell therapies	Cell Reports Methods	2022	22
21	High-throughput identification of autoantibodies that target the human exoproteome	Cell Reports Methods	2022	22
22	Single-cell intracellular epitope and transcript detection reveals signal transduction dynamics	Cell Reports Methods	2021	21
23	Graph embedding and Gaussian mixture variational autoencoder network for end-to-end analysis of single-cell RNA sequencing data	Cell Reports Methods	2023	21
24	Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples	Cell Reports Methods	2021	19
25	Optimization and validation of CAR transduction into human primary NK cells using CRISPR and AAV	Cell Reports Methods	2022	19
26	An integrated toolbox to profile macrophage immunometabolism	Cell Reports Methods	2022	18
27	A weakly supervised deep learning approach for label-free imaging flow-cytometry-based blood diagnostics	Cell Reports Methods	2021	17
28	GEM-IL: A highly responsive fluorescent lactate indicator	Cell Reports Methods	2021	17
29	Stable and reproducible homologous recombination enables CRISPR-based engineering in the fungus Rhizopus microsporus	Cell Reports Methods	2021	17
30	Unlocking SARS-CoV-2 detection in low- and middle-income countries	Cell Reports Methods	2021	15
31	An optimized genome-wide, virus-free CRISPR screen for mammalian cells	Cell Reports Methods	2021	14
32	Genetically encoded biosensors for evaluating NAD+/NADH ratio in cytosolic and mitochondrial compartments	Cell Reports Methods	2021	14
33	Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics	Cell Reports Methods	2022	14
34	Uncovering biomarkers during therapeutic neuromodulation with PARRM: Period-based Artifact Reconstruction and Removal Method	Cell Reports Methods	2021	13
35	A mouse model for the study of anti-tumor T cell responses in Kras-driven lung adenocarcinoma	Cell Reports Methods	2021	13
36	Multi-color super-resolution imaging to study human coronavirus RNA during cellular infection	Cell Reports Methods	2022	13
37	Toward real-world automated antibody design with combinatorial Bayesian optimization	Cell Reports Methods	2023	13
38	Applications of deep learning in understanding gene regulation	Cell Reports Methods	2023	13
39	Machine learning approaches to predict drug efficacy and toxicity in oncology	Cell Reports Methods	2023	13
40	High-throughput 5′P sequencing enables the study of degradation-associated ribosome stalls	Cell Reports Methods	2021	12
41	CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping	Cell Reports Methods	2021	12
42	Dense optical flow software to quantify cellular contractility	Cell Reports Methods	2021	12
43	Multiplexed imaging and automated signal quantification in formalin-fixed paraffin-embedded tissues by ChipCytometry	Cell Reports Methods	2021	12
44	Rapid detection of multiple SARS-CoV-2 variants of concern by PAM-targeting mutations	Cell Reports Methods	2022	12
45	An intravitreal implant injection method for sustained drug delivery into mouse eyes	Cell Reports Methods	2021	12
46	Open-source analysis and visualization of segmented vasculature datasets with VesselVio	Cell Reports Methods	2022	12
47	Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems	Cell Reports Methods	2022	12
48	Functional microvascularization of human myocardium in vitro	Cell Reports Methods	2022	12
49	Rapid and accurate agglutination-based testing for SARS-CoV-2 antibodies	Cell Reports Methods	2021	11
50	Interrogating RNA and protein spatial subcellular distribution in smFISH data with DypFISH	Cell Reports Methods	2021	11

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