NAR Genomics and Bioinformatics

4.2(top 10%)

impact factor

518(top 50%)

papers

3.7K(top 20%)

citations

25(top 20%)

h-index

4.3(top 10%)

extended IF

531

all documents

5.8K

doc citations

48(top 20%)

g-index

Top Articles

#	Title	Journal	Year	Citations
1	BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database	NAR Genomics and Bioinformatics	2021	803
2	ComBat-seq: batch effect adjustment for RNA-seq count data	NAR Genomics and Bioinformatics	2020	591
3	GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins	NAR Genomics and Bioinformatics	2020	256
4	Sequencing error profiles of Illumina sequencing instruments	NAR Genomics and Bioinformatics	2021	188
5	PHROG: families of prokaryotic virus proteins clustered using remote homology	NAR Genomics and Bioinformatics	2021	134
6	Visualizing ’omic feature rankings and log-ratios using Qurro	NAR Genomics and Bioinformatics	2020	97
7	DeepMicrobes: taxonomic classification for metagenomics with deep learning	NAR Genomics and Bioinformatics	2020	94
8	Benchmarking of long-read correction methods	NAR Genomics and Bioinformatics	2020	75
9	A network-based integrated framework for predicting virus–prokaryote interactions	NAR Genomics and Bioinformatics	2020	69
10	RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences	NAR Genomics and Bioinformatics	2020	65
11	Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution	NAR Genomics and Bioinformatics	2020	63
12	Hi-C analyses with GENOVA: a case study with cohesin variants	NAR Genomics and Bioinformatics	2021	59
13	Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads	NAR Genomics and Bioinformatics	2021	52
14	Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows	NAR Genomics and Bioinformatics	2021	50
15	Variable selection in microbiome compositional data analysis	NAR Genomics and Bioinformatics	2020	49
16	A map of the SARS-CoV-2 RNA structurome	NAR Genomics and Bioinformatics	2021	49
17	Deep soft K-means clustering with self-training for single-cell RNA sequence data	NAR Genomics and Bioinformatics	2020	48
18	Phen2Gene: rapid phenotype-driven gene prioritization for rare diseases	NAR Genomics and Bioinformatics	2020	45
19	Comparison of visualization tools for single-cell RNAseq data	NAR Genomics and Bioinformatics	2020	41
20	Mutation effect estimation on protein–protein interactions using deep contextualized representation learning	NAR Genomics and Bioinformatics	2020	41
21	G4-iM Grinder: when size and frequency matter. G-Quadruplex, i-Motif and higher order structure search and analysis tool	NAR Genomics and Bioinformatics	2020	41
22	Global variability analysis of mRNA and protein concentrations across and within human tissues	NAR Genomics and Bioinformatics	2020	40
23	Rapid discovery of novel prophages using biological feature engineering and machine learning	NAR Genomics and Bioinformatics	2021	39
24	Analysis of the structural variability of topologically associated domains as revealed by Hi-C	NAR Genomics and Bioinformatics	2020	38
25	miRge3.0: a comprehensive microRNA and tRF sequencing analysis pipeline	NAR Genomics and Bioinformatics	2021	38
26	Contrastive learning on protein embeddings enlightens midnight zone	NAR Genomics and Bioinformatics	2022	38
27	Covering all your bases: incorporating intron signal from RNA-seq data	NAR Genomics and Bioinformatics	2020	37
28	Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing	NAR Genomics and Bioinformatics	2020	37
29	Unraveling heteroplasmy patterns with NOVOPlasty	NAR Genomics and Bioinformatics	2020	36
30	A minimum reporting standard for multiple sequence alignments	NAR Genomics and Bioinformatics	2020	36
31	Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Big Omics Data	NAR Genomics and Bioinformatics	2020	35
32	PEPATAC: an optimized pipeline for ATAC-seq data analysis with serial alignments	NAR Genomics and Bioinformatics	2021	34
33	PHi-C: deciphering Hi-C data into polymer dynamics	NAR Genomics and Bioinformatics	2020	33
34	Interpretable detection of novel human viruses from genome sequencing data	NAR Genomics and Bioinformatics	2021	33
35	Conserved regions in long non-coding RNAs contain abundant translation and protein–RNA interaction signatures	NAR Genomics and Bioinformatics	2019	32
36	Increasing accuracy of HLA imputation by a population-specific reference panel in a FinnGen biobank cohort	NAR Genomics and Bioinformatics	2020	31
37	MR-LDP: a two-sample Mendelian randomization for GWAS summary statistics accounting for linkage disequilibrium and horizontal pleiotropy	NAR Genomics and Bioinformatics	2020	27
38	Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes	NAR Genomics and Bioinformatics	2021	27
39	The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools	NAR Genomics and Bioinformatics	2021	26
40	PanACoTA: a modular tool for massive microbial comparative genomics	NAR Genomics and Bioinformatics	2021	26
41	Nanopore sequencing of native adeno-associated virus (AAV) single-stranded DNA using a transposase-based rapid protocol	NAR Genomics and Bioinformatics	2020	24
42	nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning	NAR Genomics and Bioinformatics	2022	24
43	SMGR: a joint statistical method for integrative analysis of single-cell multi-omics data	NAR Genomics and Bioinformatics	2022	24
44	Rapid Peptides Generator: fast and efficient in silico protein digestion	NAR Genomics and Bioinformatics	2020	23
45	Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes	NAR Genomics and Bioinformatics	2021	23
46	The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana	NAR Genomics and Bioinformatics	2020	22
47	Read trimming is not required for mapping and quantification of RNA-seq reads at the gene level	NAR Genomics and Bioinformatics	2020	22
48	Shrinkage improves estimation of microbial associations under different normalization methods	NAR Genomics and Bioinformatics	2020	22
49	scAIDE: clustering of large-scale single-cell RNA-seq data reveals putative and rare cell types	NAR Genomics and Bioinformatics	2020	21
50	Host and body site-specific adaptation of Lactobacillus crispatus genomes	NAR Genomics and Bioinformatics	2020	21

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