| # | Title | Journal | Year | Citations |
|---|
| 1 | Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics | International Journal of Plant Genomics | 2008 | 1,866 |
| 2 | SNP Markers and Their Impact on Plant Breeding | International Journal of Plant Genomics | 2012 | 346 |
| 3 | Genome Mapping and Molecular Breeding of Tomato | International Journal of Plant Genomics | 2007 | 260 |
| 4 | SNP Discovery through Next-Generation Sequencing and Its Applications | International Journal of Plant Genomics | 2012 | 237 |
| 5 | Application of Association Mapping to Understanding the Genetic Diversity of Plant Germplasm Resources | International Journal of Plant Genomics | 2008 | 221 |
| 6 | Mutagenesis as a Tool in Plant Genetics, Functional Genomics, and Breeding | International Journal of Plant Genomics | 2011 | 191 |
| 7 | SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation | International Journal of Plant Genomics | 2008 | 180 |
| 8 | Wheat Genomics: Present Status and Future Prospects | International Journal of Plant Genomics | 2008 | 178 |
| 9 | Gel-Based and Gel-Free Quantitative Proteomics Approaches at a Glance | International Journal of Plant Genomics | 2012 | 148 |
| 10 | Citrus Genomics | International Journal of Plant Genomics | 2008 | 131 |
| 11 | Agrobacterium-Mediated Gene Transfer to Cereal Crop Plants: Current Protocols for Barley, Wheat, Triticale, and Maize | International Journal of Plant Genomics | 2009 | 128 |
| 12 | Recent Advances in Cotton Genomics | International Journal of Plant Genomics | 2008 | 126 |
| 13 | Genomics of Sorghum | International Journal of Plant Genomics | 2008 | 101 |
| 14 | MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research | International Journal of Plant Genomics | 2008 | 95 |
| 15 | TreeGenes: A Forest Tree Genome Database | International Journal of Plant Genomics | 2008 | 89 |
| 16 | Molecular Breeding to Improve Salt Tolerance of Rice (Oryza sativa L.) in the Red River Delta of Vietnam | International Journal of Plant Genomics | 2012 | 88 |
| 17 | Mapping Quantitative Trait Loci Using Distorted Markers | International Journal of Plant Genomics | 2009 | 73 |
| 18 | Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations | International Journal of Plant Genomics | 2008 | 68 |
| 19 | STIFDB—Arabidopsis Stress Responsive Transcription Factor DataBase | International Journal of Plant Genomics | 2009 | 67 |
| 20 | Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development | International Journal of Plant Genomics | 2008 | 64 |
| 21 | Barley Genomics: An Overview | International Journal of Plant Genomics | 2008 | 64 |
| 22 | Review of Current Methodological Approaches for Characterizing MicroRNAs in Plants | International Journal of Plant Genomics | 2009 | 62 |
| 23 | Proteomic Analysis of Soybean Roots under Aluminum Stress | International Journal of Plant Genomics | 2011 | 58 |
| 24 | PROC QTL—A SAS Procedure for Mapping Quantitative Trait Loci | International Journal of Plant Genomics | 2009 | 57 |
| 25 | Virus-Induced Gene Silencing, a Post Transcriptional Gene Silencing Method | International Journal of Plant Genomics | 2009 | 54 |
| 26 | Plant Domestication and Resistance to Herbivory | International Journal of Plant Genomics | 2013 | 54 |
| 27 | Common QTL Affect the Rate of Tomato Seed Germination under Different Stress and Nonstress Conditions | International Journal of Plant Genomics | 2007 | 53 |
| 28 | Structural and Functional Genomics of Tomato | International Journal of Plant Genomics | 2008 | 46 |
| 29 | Significance Test and Genome Selection in Bayesian Shrinkage Analysis | International Journal of Plant Genomics | 2010 | 42 |
| 30 | Analysis of Gene Expression Profiles in Leaf Tissues of Cultivated Peanuts and Development of EST-SSR Markers and Gene Discovery | International Journal of Plant Genomics | 2009 | 41 |
| 31 | Methylation, Transcription, and Rearrangements of Transposable Elements in Synthetic Allopolyploids | International Journal of Plant Genomics | 2011 | 41 |
| 32 | Recent Advances inMedicago truncatulaGenomics | International Journal of Plant Genomics | 2008 | 40 |
| 33 | Brachypodium Genomics | International Journal of Plant Genomics | 2008 | 38 |
| 34 | Structural Characterization and Expression Analysis of the SERK/SERL Gene Family in Rice (Oryza sativa) | International Journal of Plant Genomics | 2009 | 38 |
| 35 | Advances in Maize Genomics and Their Value for Enhancing Genetic Gains from Breeding | International Journal of Plant Genomics | 2009 | 37 |
| 36 | Chromosome Visualization Tool: A Whole Genome Viewer | International Journal of Plant Genomics | 2011 | 37 |
| 37 | The Arabidopsis Stress Responsive Gene Database | International Journal of Plant Genomics | 2013 | 37 |
| 38 | Temporal Gene Expression Profiling of the Wheat Leaf Rust Pathosystem Using cDNA Microarray Reveals Differences in Compatible and Incompatible Defence Pathways | International Journal of Plant Genomics | 2007 | 35 |
| 39 | Progress in Understanding and Sequencing the Genome ofBrassica rapa | International Journal of Plant Genomics | 2008 | 35 |
| 40 | Techniques to Study Autophagy in Plants | International Journal of Plant Genomics | 2009 | 34 |
| 41 | Development of SNP Genotyping Assays for Seed Composition Traits in Soybean | International Journal of Plant Genomics | 2017 | 34 |
| 42 | Soybean Genomics: Developments through the Use of Cultivar “Forrest” | International Journal of Plant Genomics | 2008 | 33 |
| 43 | Differential Expression of Three Flavanone 3-Hydroxylase Genes in Grains and Coleoptiles of Wheat | International Journal of Plant Genomics | 2011 | 32 |
| 44 | Evolutionary History of LTR Retrotransposon Chromodomains in Plants | International Journal of Plant Genomics | 2012 | 32 |
| 45 | Transcriptomic Analysis of Starch Biosynthesis in the Developing Grain of Hexaploid Wheat | International Journal of Plant Genomics | 2009 | 31 |
| 46 | Heterelogous Expression of Plant Genes | International Journal of Plant Genomics | 2009 | 30 |
| 47 | Genome-Wide Comparative Analysis of Flowering-Related Genes in Arabidopsis, Wheat, and Barley | International Journal of Plant Genomics | 2015 | 30 |
| 48 | QTL Mapping of a High Protein Digestibility Trait in Sorghum bicolor | International Journal of Plant Genomics | 2009 | 26 |
| 49 | SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species | International Journal of Plant Genomics | 2013 | 26 |
| 50 | A Solanum lycopersicum × Solanum pimpinellifolium Linkage Map of Tomato Displaying Genomic Locations of R-Genes, RGAs, and Candidate Resistance/Defense-Response ESTs | International Journal of Plant Genomics | 2008 | 24 |
