# | Title | Journal | Year | Citations |
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1 | Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms | ISME Journal | 2012 | 7,430 |
2 | An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea | ISME Journal | 2012 | 4,581 |
3 | Soil bacterial and fungal communities across a pH gradient in an arable soil | ISME Journal | 2010 | 3,154 |
4 | Exact sequence variants should replace operational taxonomic units in marker-gene data analysis | ISME Journal | 2017 | 2,357 |
5 | UniFrac: an effective distance metric for microbial community comparison | ISME Journal | 2011 | 2,280 |
6 | Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea | ISME Journal | 2011 | 2,219 |
7 | Using network analysis to explore co-occurrence patterns in soil microbial communities | ISME Journal | 2012 | 2,051 |
8 | Pyrosequencing enumerates and contrasts soil microbial diversity | ISME Journal | 2007 | 1,615 |
9 | Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients | ISME Journal | 2012 | 1,405 |
10 | Quantifying community assembly processes and identifying features that impose them | ISME Journal | 2013 | 1,354 |
11 | Dominant and diet-responsive groups of bacteria within the human colonic microbiota | ISME Journal | 2011 | 1,352 |
12 | dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication | ISME Journal | 2017 | 1,309 |
13 | Stochastic and deterministic assembly processes in subsurface microbial communities | ISME Journal | 2012 | 1,203 |
14 | Rhizosphere microbiome assemblage is affected by plant development | ISME Journal | 2014 | 1,128 |
15 | Examining the global distribution of dominant archaeal populations in soil | ISME Journal | 2011 | 1,112 |
16 | Distinct soil microbial diversity under long-term organic and conventional farming | ISME Journal | 2015 | 1,076 |
17 | Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers | ISME Journal | 2012 | 1,038 |
18 | Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes | ISME Journal | 2013 | 1,031 |
19 | Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data | ISME Journal | 2010 | 1,025 |
20 | Evidence for a core gut microbiota in the zebrafish | ISME Journal | 2011 | 990 |
21 | A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses | ISME Journal | 2009 | 984 |
22 | Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution | ISME Journal | 2015 | 974 |
23 | Plant host habitat and root exudates shape soil bacterial community structure | ISME Journal | 2008 | 958 |
24 | 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants | ISME Journal | 2012 | 957 |
25 | Defining seasonal marine microbial community dynamics | ISME Journal | 2012 | 928 |
26 | Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes | ISME Journal | 2015 | 928 |
27 | Microbial contributions to climate change through carbon cycle feedbacks | ISME Journal | 2008 | 888 |
28 | Stress tolerance in plants via habitat-adapted symbiosis | ISME Journal | 2008 | 887 |
29 | Long-term ecological impacts of antibiotic administration on the human intestinal microbiota | ISME Journal | 2007 | 885 |
30 | Phylogenetic distribution of three pathways for propionate production within the human gut microbiota | ISME Journal | 2014 | 861 |
31 | Where less may be more: how the rare biosphere pulls ecosystems strings | ISME Journal | 2017 | 857 |
32 | Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice | ISME Journal | 2010 | 845 |
33 | Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon | ISME Journal | 2012 | 801 |
34 | Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing | ISME Journal | 2012 | 799 |
35 | Exploring the bovine rumen bacterial community from birth to adulthood | ISME Journal | 2013 | 799 |
36 | The subgingival microbiome in health and periodontitis and its relationship with community biomass and inflammation | ISME Journal | 2013 | 785 |
37 | Responses of soil bacterial and fungal communities to extreme desiccation and rewetting | ISME Journal | 2013 | 762 |
38 | Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China | ISME Journal | 2016 | 758 |
39 | Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge | ISME Journal | 2009 | 728 |
40 | Active and total microbial communities in forest soil are largely different and highly stratified during decomposition | ISME Journal | 2012 | 725 |
41 | Relative roles of niche and neutral processes in structuring a soil microbial community | ISME Journal | 2010 | 718 |
42 | Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots | ISME Journal | 2019 | 716 |
43 | Toward defining the autoimmune microbiome for type 1 diabetes | ISME Journal | 2011 | 709 |
44 | Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice | ISME Journal | 2015 | 703 |
45 | Implications of streamlining theory for microbial ecology | ISME Journal | 2014 | 664 |
46 | Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses | ISME Journal | 2013 | 661 |
47 | Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice | ISME Journal | 2012 | 635 |
48 | Taxonomical and functional microbial community selection in soybean rhizosphere | ISME Journal | 2014 | 633 |
49 | Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development | ISME Journal | 2016 | 627 |
50 | New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation | ISME Journal | 2007 | 618 |