150
Journals
259.6K
Articles
5.9M
Citations
79.6K
Authors

Most Cited Articles of Computational Mathematics

TitleJournalYearCitations
Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis setComputational Materials Science199641.7K
The Sequence Alignment/Map format and SAMtoolsBioinformatics200930.8K
Fast Parallel Algorithms for Short-Range Molecular DynamicsJournal of Computational Physics199527.3K
UCSF Chimera--a visualization system for exploratory research and analysisJournal of Computational Chemistry200426.5K
Fast and accurate short read alignment with Burrows-Wheeler transformBioinformatics200926.1K
Trimmomatic: a flexible trimmer for Illumina sequence dataBioinformatics201424.7K
MrBayes 3: Bayesian phylogenetic inference under mixed modelsBioinformatics200323.3K
Clustal W and Clustal X version 2.0Bioinformatics200721.3K
edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics201019.6K
Semiempirical GGA-type density functional constructed with a long-range dispersion correctionJournal of Computational Chemistry200619.1K
STAR: ultrafast universal RNA-seq alignerBioinformatics201318.1K
MRBAYES: Bayesian inference of phylogenetic treesBioinformatics200117.8K
MODELTEST: testing the model of DNA substitutionBioinformatics199817.5K
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics201417.4K
General atomic and molecular electronic structure systemJournal of Computational Chemistry199317.2K
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanesJournal of Computational Physics197715.6K
Search and clustering orders of magnitude faster than BLASTBioinformatics201013.4K
CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry198313K
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics200612.7K
Scalable molecular dynamics with NAMDJournal of Computational Chemistry200512.7K
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencingJournal of Computational Biology201212K
BEDTools: a flexible suite of utilities for comparing genomic featuresBioinformatics201011.8K
Haploview: analysis and visualization of LD and haplotype mapsBioinformatics200511.8K
AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreadingJournal of Computational Chemistry201011.7K
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibilityJournal of Computational Chemistry200911.7K