3.9(top 10%)
impact factor
9.5K(top 2%)
papers
399.0K(top 1%)
citations
224(top 1%)
h-index
4.2(top 10%)
impact factor
10.9K
all documents
474.4K
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383(top 1%)
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Top Articles

#TitleJournalYearCitations
1BEAST 2: A Software Platform for Bayesian Evolutionary AnalysisPLoS Computational Biology20145,301
2Unicycler: Resolving bacterial genome assemblies from short and long sequencing readsPLoS Computational Biology20175,135
3Accelerated Profile HMM SearchesPLoS Computational Biology20115,076
4Software for Computing and Annotating Genomic RangesPLoS Computational Biology20133,262
5The Human Connectome: A Structural Description of the Human BrainPLoS Computational Biology20052,641
6BEAST 2.5: An advanced software platform for Bayesian evolutionary analysisPLoS Computational Biology20192,484
7MAGMA: Generalized Gene-Set Analysis of GWAS DataPLoS Computational Biology20152,344
8Waste Not, Want Not: Why Rarefying Microbiome Data Is InadmissiblePLoS Computational Biology20142,343
9mixOmics: An R package for ‘omics feature selection and multiple data integrationPLoS Computational Biology20172,279
10Efficiency and Cost of Economical Brain Functional NetworksPLoS Computational Biology20072,100
11Inferring Correlation Networks from Genomic Survey DataPLoS Computational Biology20121,874
12OpenMM 7: Rapid development of high performance algorithms for molecular dynamicsPLoS Computational Biology20171,561
13Bayesian Phylogeography Finds Its RootsPLoS Computational Biology20091,519
14MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing DataPLoS Computational Biology20161,500
15Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic SamplesPLoS Computational Biology20091,495
16Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++PLoS Computational Biology20101,443
17MUMmer4: A fast and versatile genome alignment systemPLoS Computational Biology20181,412
18Functional Brain Networks Develop from a “Local to Distributed” OrganizationPLoS Computational Biology20091,274
19Microbial Co-occurrence Relationships in the Human MicrobiomePLoS Computational Biology20121,268
20Ten Years of Pathway Analysis: Current Approaches and Outstanding ChallengesPLoS Computational Biology20121,267
21CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA SequencingPLoS Computational Biology20161,260
22Sparse and Compositionally Robust Inference of Microbial Ecological NetworksPLoS Computational Biology20151,089
23Universally Sloppy Parameter Sensitivities in Systems Biology ModelsPLoS Computational Biology20071,026
24Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's DiseasePLoS Computational Biology2008995
25CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein StructuresPLoS Computational Biology2012991
26Simulation of the Undiseased Human Cardiac Ventricular Action Potential: Model Formulation and Experimental ValidationPLoS Computational Biology2011960
27Chapter 11: Genome-Wide Association StudiesPLoS Computational Biology2012950
28Metabolic Reconstruction for Metagenomic Data and Its Application to the Human MicrobiomePLoS Computational Biology2012939
29Deep Supervised, but Not Unsupervised, Models May Explain IT Cortical RepresentationPLoS Computational Biology2014908
30Is My Network Module Preserved and Reproducible?PLoS Computational Biology2011885
31The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression DynamicsPLoS Computational Biology2007849
32ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial GenomesPLoS Computational Biology2015841
33A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic GenomesPLoS Computational Biology2005835
34The Dynamic Brain: From Spiking Neurons to Neural Masses and Cortical FieldsPLoS Computational Biology2008832
35iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track CollectionsPLoS Computational Biology2014787
36Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning ModelPLoS Computational Biology2017783
37An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence DataPLoS Computational Biology2009777
38Associating Genes and Protein Complexes with Disease via Network PropagationPLoS Computational Biology2010758
39A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus ApproachPLoS Computational Biology2008739
40OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movementPLoS Computational Biology2018735
41Polarizable Water Model for the Coarse-Grained MARTINI Force FieldPLoS Computational Biology2010726
42Geometric Interpretation of Gene Coexpression Network AnalysisPLoS Computational Biology2008719
43A Toolbox for Representational Similarity AnalysisPLoS Computational Biology2014715
44Structural Properties of the Caenorhabditis elegans Neuronal NetworkPLoS Computational Biology2011701
45Predicting Network Activity from High Throughput MetabolomicsPLoS Computational Biology2013697
46Multivariable association discovery in population-scale meta-omics studiesPLoS Computational Biology2021691
47Transcriptomics technologiesPLoS Computational Biology2017677
48Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based InferencePLoS Computational Biology2012674
49Deep Neural Networks Rival the Representation of Primate IT Cortex for Core Visual Object RecognitionPLoS Computational Biology2014668
50Projecting social contact matrices in 152 countries using contact surveys and demographic dataPLoS Computational Biology2017666