4.2(top 10%)
impact factor
8.6K(top 2%)
papers
374.4K(top 1%)
citations
192(top 2%)
h-index
4.2(top 10%)
impact factor
9.8K
all documents
400.5K
doc citations
293(top 2%)
g-index

Top Articles

#TitleJournalYearCitations
1Andromeda: A Peptide Search Engine Integrated into the MaxQuant EnvironmentJournal of Proteome Research20114,935
2Evaluation of Multidimensional Chromatography Coupled with Tandem Mass Spectrometry (LC/LC−MS/MS) for Large-Scale Protein Analysis:  The Yeast ProteomeJournal of Proteome Research20031,557
3Open Mass Spectrometry Search AlgorithmJournal of Proteome Research20041,350
4Proteomic Analysis of the Mode of Antibacterial Action of Silver NanoparticlesJournal of Proteome Research20061,331
5DTASelect and Contrast:  Tools for Assembling and Comparing Protein Identifications from Shotgun ProteomicsJournal of Proteome Research20021,327
6Cytoscape StringApp: Network Analysis and Visualization of Proteomics DataJournal of Proteome Research20191,228
7Chemometrics in MetabonomicsJournal of Proteome Research20071,124
8Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiaeJournal of Proteome Research20061,042
9GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of GlycansJournal of Proteome Research2008917
10Quantitative Metabolome Analysis Using Capillary Electrophoresis Mass SpectrometryJournal of Proteome Research2003912
11Counting the Zinc-Proteins Encoded in the Human GenomeJournal of Proteome Research2006887
12Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical AnalysesJournal of Proteome Research2015886
13Mass Spectrometric Quantitation of Peptides and Proteins Using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA)Journal of Proteome Research2004773
14Universal and Confident Phosphorylation Site Localization Using phosphoRSJournal of Proteome Research2011732
15Systems Biology, Proteomics, and the Future of Health Care:  Toward Predictive, Preventative, and Personalized MedicineJournal of Proteome Research2004680
16Open Source System for Analyzing, Validating, and Storing Protein Identification DataJournal of Proteome Research2004667
17More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MSJournal of Proteome Research2011595
18Standard Operating Procedures for Serum and Plasma Collection: Early Detection Research Network Consensus Statement Standard Operating Procedure Integration Working GroupJournal of Proteome Research2009578
19Comparative Study of Three Proteomic Quantitative Methods, DIGE, cICAT, and iTRAQ, Using 2D Gel- or LC−MALDI TOF/TOFJournal of Proteome Research2006557
20Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy DatabasesJournal of Proteome Research2008551
21Zinc through the Three Domains of LifeJournal of Proteome Research2006544
22Rapid and Noninvasive Metabonomic Characterization of Inflammatory Bowel DiseaseJournal of Proteome Research2007539
23Phase Transfer Surfactant-Aided Trypsin Digestion for Membrane Proteome AnalysisJournal of Proteome Research2008536
24MyriMatch:  Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric AnalysisJournal of Proteome Research2007530
25Characterization and Comprehensive Proteome Profiling of Exosomes Secreted by HepatocytesJournal of Proteome Research2008530
26Functional Anthology of Intrinsic Disorder. 1. Biological Processes and Functions of Proteins with Long Disordered RegionsJournal of Proteome Research2007525
27Isobaric Labeling-Based Relative Quantification in Shotgun ProteomicsJournal of Proteome Research2014520
28Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane ProteomeJournal of Proteome Research2009507
29Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass SpectrometryJournal of Proteome Research2010505
30Analytical Strategies in MetabonomicsJournal of Proteome Research2007497
31iTRAQ Underestimation in Simple and Complex Mixtures: “The Good, the Bad and the Ugly”Journal of Proteome Research2009469
32Within-Day Reproducibility of an HPLC−MS-Based Method for Metabonomic Analysis:  Application to Human UrineJournal of Proteome Research2007459
33A New Strategy for Identification of N-Glycosylated Proteins and Unambiguous Assignment of Their Glycosylation Sites Using HILIC Enrichment and Partial DeglycosylationJournal of Proteome Research2004452
34Properties of13C-Substituted Arginine in Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)Journal of Proteome Research2003439
35Cell-Specific Aptamer Probes for Membrane Protein Elucidation in Cancer CellsJournal of Proteome Research2008434
36Characterization of Molecular Recognition Features, MoRFs, and Their Binding PartnersJournal of Proteome Research2007433
37Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy DatabasesJournal of Proteome Research2008426
38High Resolution “Ultra Performance” Liquid Chromatography Coupled to oa-TOF Mass Spectrometry as a Tool for Differential Metabolic Pathway Profiling in Functional Genomic StudiesJournal of Proteome Research2005423
39An Assessment of Software Solutions for the Analysis of Mass Spectrometry Based Quantitative Proteomics DataJournal of Proteome Research2008423
40Global Analysis of TDP-43 Interacting Proteins Reveals Strong Association with RNA Splicing and Translation MachineryJournal of Proteome Research2010422
41MS Amanda, a Universal Identification Algorithm Optimized for High Accuracy Tandem Mass SpectraJournal of Proteome Research2014416
42Metabolic Profiling of Human Colorectal Cancer Using High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance (HR-MAS NMR) Spectroscopy and Gas Chromatography Mass Spectrometry (GC/MS)Journal of Proteome Research2009414
43Coomassie Staining as Loading Control in Western Blot AnalysisJournal of Proteome Research2011410
44Accurate and Sensitive Peptide Identification with Mascot PercolatorJournal of Proteome Research2009399
45Quantitative Profiling of Proteins in Complex Mixtures Using Liquid Chromatography and Mass SpectrometryJournal of Proteome Research2002398
46Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based ProteomicsJournal of Proteome Research2010398
47Human PlasmaN-Glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass SpectrometryJournal of Proteome Research2005394
48Deep-Learning-Based Drug–Target Interaction PredictionJournal of Proteome Research2017381
49The Proteomes of Human Parotid and Submandibular/Sublingual Gland Salivas Collected as the Ductal SecretionsJournal of Proteome Research2008376
50Normalization Approaches for Removing Systematic Biases Associated with Mass Spectrometry and Label-Free ProteomicsJournal of Proteome Research2006375