| # | Title | Journal | Year | Citations |
|---|
| 1 | Finding and evaluating community structure in networks | Physical Review E | 2004 | 9,503 |
| 2 | Finding community structure in very large networks | Physical Review E | 2004 | 5,083 |
| 3 | Social force model for pedestrian dynamics | Physical Review E | 1995 | 4,449 |
| 4 | Mosaic organization of DNA nucleotides | Physical Review E | 1994 | 3,996 |
| 5 | Fast algorithm for detecting community structure in networks | Physical Review E | 2004 | 3,851 |
| 6 | Finding community structure in networks using the eigenvectors of matrices | Physical Review E | 2006 | 3,485 |
| 7 | Congested traffic states in empirical observations and microscopic simulations | Physical Review E | 2000 | 2,876 |
| 8 | Lattice Boltzmann model for simulating flows with multiple phases and components | Physical Review E | 1993 | 2,718 |
| 9 | Random graphs with arbitrary degree distributions and their applications | Physical Review E | 2001 | 2,651 |
| 10 | Electromagnetic parameter retrieval from inhomogeneous metamaterials | Physical Review E | 2005 | 2,431 |
| 11 | Near linear time algorithm to detect community structures in large-scale networks | Physical Review E | 2007 | 2,431 |
| 12 | Spread of epidemic disease on networks | Physical Review E | 2002 | 2,366 |
| 13 | Dynamical model of traffic congestion and numerical simulation | Physical Review E | 1995 | 2,364 |
| 14 | Estimating mutual information | Physical Review E | 2004 | 2,315 |
| 15 | Benchmark graphs for testing community detection algorithms | Physical Review E | 2008 | 2,182 |
| 16 | Mixing patterns in networks | Physical Review E | 2003 | 2,156 |
| 17 | Chaos and quantum thermalization | Physical Review E | 1994 | 2,095 |
| 18 | Indications of nonlinear deterministic and finite-dimensional structures in time series of brain electrical activity: Dependence on recording region and brain state | Physical Review E | 2001 | 2,068 |
| 19 | Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences | Physical Review E | 1999 | 1,940 |
| 20 | Multiscale entropy analysis of biological signals | Physical Review E | 2005 | 1,882 |
| 21 | Contact line deposits in an evaporating drop | Physical Review E | 2000 | 1,872 |
| 22 | Scientific collaboration networks. II. Shortest paths, weighted networks, and centrality | Physical Review E | 2001 | 1,763 |
| 23 | Dynamics of viscoplastic deformation in amorphous solids | Physical Review E | 1998 | 1,749 |
| 24 | Analysis of weighted networks | Physical Review E | 2004 | 1,735 |
| 25 | Robust method to retrieve the constitutive effective parameters of metamaterials | Physical Review E | 2004 | 1,719 |
| 26 | Discrete lattice effects on the forcing term in the lattice Boltzmann method | Physical Review E | 2002 | 1,688 |
| 27 | Theory of the lattice Boltzmann method: Dispersion, dissipation, isotropy, Galilean invariance, and stability | Physical Review E | 2000 | 1,660 |
| 28 | Hierarchical organization in complex networks | Physical Review E | 2003 | 1,604 |
| 29 | Community detection algorithms: A comparative analysis | Physical Review E | 2009 | 1,546 |
| 30 | Generalized synchronization of chaos in directionally coupled chaotic systems | Physical Review E | 1995 | 1,489 |
| 31 | Electromagnetic contributions to single-molecule sensitivity in surface-enhanced Raman scattering | Physical Review E | 2000 | 1,484 |
| 32 | Scientific collaboration networks. I. Network construction and fundamental results | Physical Review E | 2001 | 1,474 |
| 33 | Statistical mechanics of community detection | Physical Review E | 2006 | 1,427 |
| 34 | Quantum annealing in the transverse Ising model | Physical Review E | 1998 | 1,375 |
| 35 | Clustering and preferential attachment in growing networks | Physical Review E | 2001 | 1,365 |
| 36 | Attack vulnerability of complex networks | Physical Review E | 2002 | 1,365 |
| 37 | Achieving transparency with plasmonic and metamaterial coatings | Physical Review E | 2005 | 1,346 |
| 38 | Cascade-based attacks on complex networks | Physical Review E | 2002 | 1,335 |
| 39 | Theory of the lattice Boltzmann method: From the Boltzmann equation to the lattice Boltzmann equation | Physical Review E | 1997 | 1,328 |
| 40 | Jamming at zero temperature and zero applied stress: The epitome of disorder | Physical Review E | 2003 | 1,282 |
| 41 | Epidemic dynamics and endemic states in complex networks | Physical Review E | 2001 | 1,273 |
| 42 | Evolutionary prisoner’s dilemma game on a square lattice | Physical Review E | 1998 | 1,261 |
| 43 | Quantitative phase-field modeling of dendritic growth in two and three dimensions | Physical Review E | 1998 | 1,250 |
| 44 | Community detection in complex networks using extremal optimization | Physical Review E | 2005 | 1,233 |
| 45 | Full velocity difference model for a car-following theory | Physical Review E | 2001 | 1,208 |
| 46 | Flocks, herds, and schools: A quantitative theory of flocking | Physical Review E | 1998 | 1,198 |
| 47 | Stochastic blockmodels and community structure in networks | Physical Review E | 2011 | 1,198 |
| 48 | Simulation of nonideal gases and liquid-gas phase transitions by the lattice Boltzmann equation | Physical Review E | 1994 | 1,136 |
| 49 | Testing mode-coupling theory for a supercooled binary Lennard-Jones mixture I: The van Hove correlation function | Physical Review E | 1995 | 1,123 |
| 50 | Lattice Boltzmann simulations of liquid-gas and binary fluid systems | Physical Review E | 1996 | 1,110 |
