| MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 | Molecular Biology and Evolution | 2007 | 24.1K |
| PLINK: a tool set for whole-genome association and population-based linkage analyses | American Journal of Human Genetics | 2007 | 19.2K |
| PAML 4: phylogenetic analysis by maximum likelihood | Molecular Biology and Evolution | 2007 | 7.9K |
| SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB | Nucleic Acids Research | 2007 | 4.5K |
| RNAmmer: consistent and rapid annotation of ribosomal RNA genes | Nucleic Acids Research | 2007 | 3.9K |
| Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment | Molecular Ecology | 2007 | 3.6K |
| bold: The Barcode of Life Data System (http://www.barcodinglife.org) | Molecular Ecology Notes | 2007 | 3.4K |
| Arlequin (version 3.0): an integrated software package for population genetics data analysis | Evolutionary Bioinformatics | 2007 | 3.3K |
| Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments | Systematic Biology | 2007 | 3.1K |
| ALDH1 is a marker of normal and malignant human mammary stem cells and a predictor of poor clinical outcome | Cell Stem Cell | 2007 | 3.1K |
| ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins | Nucleic Acids Research | 2007 | 3K |
| MolProbity: all-atom contacts and structure validation for proteins and nucleic acids | Nucleic Acids Research | 2007 | 3K |
| qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data | Genome Biology | 2007 | 2.8K |
| Autophagy: process and function | Genes and Development | 2007 | 2.7K |
| KAAS: an automatic genome annotation and pathway reconstruction server | Nucleic Acids Research | 2007 | 2.5K |
| Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome | Nature Genetics | 2007 | 2.4K |
| Inference of population structure using multilocus genotype data: dominant markers and null alleles | Molecular Ecology Notes | 2007 | 2.3K |
| Species concepts and species delimitation | Systematic Biology | 2007 | 2.3K |
| A global double-fluorescent Cre reporter mouse | Genesis | 2007 | 2.2K |
| Distinct populations of cancer stem cells determine tumor growth and metastatic activity in human pancreatic cancer | Cell Stem Cell | 2007 | 2.2K |
| WoLF PSORT: protein localization predictor | Nucleic Acids Research | 2007 | 2.1K |
| Network motifs: theory and experimental approaches | Nature Reviews Genetics | 2007 | 2.1K |
| NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins | Nucleic Acids Research | 2007 | 2.1K |
| Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer | Oncogene | 2007 | 2.1K |
| MEGAN analysis of metagenomic data | Genome Research | 2007 | 2.1K |
