150
Journals
259.6K
Articles
5.9M
Citations
79.6K
Authors

Most Cited Articles of Computational Mathematics in 2005

TitleJournalYearCitations
Scalable molecular dynamics with NAMDJournal of Computational Chemistry200512.7K
Haploview: analysis and visualization of LD and haplotype mapsBioinformatics200511.8K
GROMACS: fast, flexible, and freeJournal of Computational Chemistry200510.3K
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics researchBioinformatics20058.2K
The Amber biomolecular simulation programsJournal of Computational Chemistry20056.2K
PLS path modelingComputational Statistics and Data Analysis20053.1K
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networksBioinformatics20053.1K
A general framework for weighted gene co-expression network analysisStatistical Applications in Genetics and Molecular Biology20053K
PowerMarker: an integrated analysis environment for genetic marker analysisBioinformatics20052.9K
ProtTest: selection of best-fit models of protein evolutionBioinformatics20052.6K
HyPhy: hypothesis testing using phylogeniesBioinformatics20052.1K
ROCR: visualizing classifier performance in RBioinformatics20052K
Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabularyBioinformatics20051.9K
Protein homology detection by HMM-HMM comparisonBioinformatics20051.9K
MatInspector and beyond: promoter analysis based on transcription factor binding sitesBioinformatics20051.7K
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy contentBioinformatics20051.6K
GMAP: a genomic mapping and alignment program for mRNA and EST sequencesBioinformatics20051.4K
SNOPT: An SQP Algorithm for Large-Scale Constrained OptimizationSIAM Review20051.3K
ACT: the Artemis Comparison ToolBioinformatics20051.3K
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic treesBioinformatics20051.2K
Use of within-array replicate spots for assessing differential expression in microarray experimentsBioinformatics20051.1K
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysisBioinformatics20051.1K
GMD@CSB.DB: the Golm Metabolome DatabaseBioinformatics20051.1K
Datamonkey: rapid detection of selective pressure on individual sites of codon alignmentsBioinformatics20051.1K
De novo identification of repeat families in large genomesBioinformatics20051K