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Top Articles

#TitleJournalYearCitations
1Cutoff criteria for fit indexes in covariance structure analysis: Conventional criteria versus new alternativesStructural Equation Modeling199969,701
2The Measurement of Observer Agreement for Categorical DataBiometrics197755,540
3Efficiency of ab-initio total energy calculations for metals and semiconductors using a plane-wave basis setComputational Materials Science199654,900
4Fitting Linear Mixed-Effects Models Usinglme4Journal of Statistical Software201551,305
5The Sequence Alignment/Map format and SAMtoolsBioinformatics200949,124
6Trimmomatic: a flexible trimmer for Illumina sequence dataBioinformatics201446,646
7Fast and accurate short read alignment with Burrows–Wheeler transformBioinformatics200943,062
8Nonparametric Estimation from Incomplete ObservationsJournal of the American Statistical Association195842,634
9UCSF Chimera?A visualization system for exploratory research and analysisJournal of Computational Chemistry200437,095
10STAR: ultrafast universal RNA-seq alignerBioinformatics201335,376
11Fast Parallel Algorithms for Short-Range Molecular DynamicsJournal of Computational Physics199535,279
12Estimating the Dimension of a ModelAnnals of Statistics197833,253
13A fast and elitist multiobjective genetic algorithm: NSGA-IIIEEE Transactions on Evolutionary Computation200232,998
14edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataBioinformatics201032,955
15A Coefficient of Agreement for Nominal ScalesEducational and Psychological Measurement196030,234
16Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple TestingJournal of the Royal Statistical Society Series B: Methodological199529,977
17Coefficient alpha and the internal structure of testsPsychometrika195129,707
18U-Net: Convolutional Networks for Biomedical Image SegmentationLecture Notes in Computer Science201527,139
19Quantifying heterogeneity in a meta-analysisStatistics in Medicine200226,845
20RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics201426,744
21MrBayes 3: Bayesian phylogenetic inference under mixed modelsBioinformatics200326,519
22Clustal W and Clustal X version 2.0Bioinformatics200725,174
23LIBSVMACM Transactions on Intelligent Systems and Technology201125,138
24An Algorithm for Least-Squares Estimation of Nonlinear ParametersJournal of the Society for Industrial and Applied Mathematics196324,784
25Semiempirical GGA-type density functional constructed with a long-range dispersion correctionJournal of Computational Chemistry200624,222
26Measuring the efficiency of decision making unitsEuropean Journal of Operational Research197822,137
27Multiwfn: A multifunctional wavefunction analyzerJournal of Computational Chemistry201221,818
28A Computational Approach to Edge DetectionIEEE Transactions on Pattern Analysis and Machine Intelligence198621,603
29The central role of the propensity score in observational studies for causal effectsBiometrika198321,591
30AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreadingJournal of Computational Chemistry201021,573
31Compressed sensingIEEE Transactions on Information Theory200620,437
32BEDTools: a flexible suite of utilities for comparing genomic featuresBioinformatics201020,367
33SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell SequencingJournal of Computational Biology201220,193
34MRBAYES: Bayesian inference of phylogenetic treesBioinformatics200120,154
35Faster R-CNN: Towards Real-Time Object Detection with Region Proposal NetworksIEEE Transactions on Pattern Analysis and Machine Intelligence201720,130
36General atomic and molecular electronic structure systemJournal of Computational Chemistry199319,020
37MODELTEST: testing the model of DNA substitutionBioinformatics199818,761
38Search and clustering orders of magnitude faster than BLASTBioinformatics201018,572
39Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanesJournal of Computational Physics197718,418
40A note on two problems in connexion with graphsNumerische Mathematik195918,243
41WGCNA: an R package for weighted correlation network analysisBMC Bioinformatics200817,294
42HTSeq—a Python framework to work with high-throughput sequencing dataBioinformatics201517,270
43The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysisProceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences199817,192
44Multiple Range and Multiple F TestsBiometrics195517,123
45AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibilityJournal of Computational Chemistry200916,850
46featureCounts: an efficient general purpose program for assigning sequence reads to genomic featuresBioinformatics201416,839
47A theory for multiresolution signal decomposition: the wavelet representationIEEE Transactions on Pattern Analysis and Machine Intelligence198916,677
48Comparing the Areas under Two or More Correlated Receiver Operating Characteristic Curves: A Nonparametric ApproachBiometrics198816,564
49The measurement of observer agreement for categorical dataBiometrics197716,399
50Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence dataBioinformatics201216,096
51RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeBMC Bioinformatics201116,042
52Effect of the damping function in dispersion corrected density functional theoryJournal of Computational Chemistry201115,980
53Initial conditions and moment restrictions in dynamic panel data modelsJournal of Econometrics199815,755
54Generalized autoregressive conditional heteroskedasticityJournal of Econometrics198615,494
55Maximum Likelihood from Incomplete Data Via the EM AlgorithmJournal of the Royal Statistical Society Series B: Methodological197715,310
56Scalable molecular dynamics with NAMDJournal of Computational Chemistry200515,208
57Longitudinal data analysis using generalized linear modelsBiometrika198615,204
58BLAST+: architecture and applicationsBMC Bioinformatics200914,935
59RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics200614,675
60A Survey on Transfer LearningIEEE Transactions on Knowledge and Data Engineering201014,602
61Hierarchical Grouping to Optimize an Objective FunctionJournal of the American Statistical Association196314,513
62Regression Shrinkage and Selection Via the LassoJournal of the Royal Statistical Society Series B: Methodological199614,507
63The genetical evolution of social behaviour. IJournal of Theoretical Biology196414,412
64Development and testing of a general amber force fieldJournal of Computational Chemistry200414,342
65The Structure and Function of Complex NetworksSIAM Review200314,326
66CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsJournal of Computational Chemistry198314,316
67Distribution of the Estimators for Autoregressive Time Series with a Unit RootJournal of the American Statistical Association197914,276
68lavaan: AnRPackage for Structural Equation ModelingJournal of Statistical Software201214,037
69Greedy function approximation: A gradient boosting machine.Annals of Statistics200113,968
70An analysis of variance test for normality (complete samples)Biometrika196513,862
71Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of ImagesIEEE Transactions on Pattern Analysis and Machine Intelligence198413,839
72GROMACS: Fast, flexible, and freeJournal of Computational Chemistry200513,676
73DnaSP v5: a software for comprehensive analysis of DNA polymorphism dataBioinformatics200913,645
74A method for registration of 3-D shapesIEEE Transactions on Pattern Analysis and Machine Intelligence199213,602
75LINCS: A linear constraint solver for molecular simulationsJournal of Computational Chemistry199713,446
76Operating Characteristics of a Rank Correlation Test for Publication BiasBiometrics199413,306
77UCHIME improves sensitivity and speed of chimera detectionBioinformatics201113,241
78Haploview: analysis and visualization of LD and haplotype mapsBioinformatics200513,223
79Statistical analysis of cointegration vectorsJournal of Economic Dynamics and Control198813,109
80Another look at the instrumental variable estimation of error-components modelsJournal of Econometrics199512,990
81Regularization and variable selection via the elastic netJournal of the Royal Statistical Society Series B: Statistical Methodology200512,982
82A logical calculus of the ideas immanent in nervous activityThe Bulletin of Mathematical Biophysics194312,960
83Prokka: rapid prokaryotic genome annotationBioinformatics201412,881
84Fast unfolding of communities in large networksJournal of Statistical Mechanics: Theory and Experiment200812,786
85Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal OmegaMolecular Systems Biology201112,778
86Microsoft COCO: Common Objects in ContextLecture Notes in Computer Science201412,775
87Silhouettes: A graphical aid to the interpretation and validation of cluster analysisJournal of Computational and Applied Mathematics198712,746
88Bootstrap Methods: Another Look at the JackknifeAnnals of Statistics197912,510
89A Decision-Theoretic Generalization of On-Line Learning and an Application to BoostingJournal of Computer and System Sciences199712,470
90Testing for a unit root in time series regressionBiometrika198812,419
91lmerTest Package: Tests in Linear Mixed Effects ModelsJournal of Statistical Software201712,283
92Nonlinear total variation based noise removal algorithmsPhysica D: Nonlinear Phenomena199212,211
93Multiresolution gray-scale and rotation invariant texture classification with local binary patternsIEEE Transactions on Pattern Analysis and Machine Intelligence200212,183
94Volume of fluid (VOF) method for the dynamics of free boundariesJournal of Computational Physics198112,164
95Intuitionistic fuzzy setsFuzzy Sets and Systems198612,130
96Robust uncertainty principles: exact signal reconstruction from highly incomplete frequency informationIEEE Transactions on Information Theory200611,987
97DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFsIEEE Transactions on Pattern Analysis and Machine Intelligence201811,963
98SSD: Single Shot MultiBox DetectorLecture Notes in Computer Science201611,879
99Bayes FactorsJournal of the American Statistical Association199511,852
100Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulationsJournal of Computational Physics198811,578